For each dataset, SCPRCB provides download for (1) raw data, (2) protein expression result (3) Fasta file used in the analysis and (4) a zip file containing other relevant files such as sample annotation, TMT label panel.
Users can download each file directly from the webpage or use a batch download tool.
To download any data from the webpage, user can (1) push the download button behind the files or (2) select the wanted filed at the checkbox Infront of each file and click the “Batch Download” button, a zip package containing all the selected files well be created for users to click and download.
A batch download tool is also provided, users can edit the file list of interest and can download files from different dataset at once. The guideline of this download tool is as followed:
Download Tool:
SingPro provide two kinds of tools corresponding to different platforms. Users can choose Data Download Tool corresponding to their familiar operating platforms. If you find any error in Data Download Tool, please kindly report it to Dr. Lian and Dr. Zhang.
Windows Linux data_download_tool_Windows.zip data_download_tool_Linux.zip
Windows:
1.Get Data Download Tool
First, click "data_download_tool_Windows.zip" to download the Data Download Tool.
Then place the compressed package in any path to decompress, and obtain "data_download_tool_Windows" folder after decompression. This folder contains two executable files: "main.exe" and "wget.exe", the former is the main file for batch download, and the latter is the dependent file.
When Data Download Tool download data in batches, it will use the breakpoint reconnection function of wget to avoid the inconvenience caused by the interruption of file download due to network or other problems. You can click here to get detail information of "wget.exe".
2.Get Download File ID List
Users can download the ID list of files for any SingPro project and place it in the "data_download_tool_Windows" folder
3.Start Batch Download
If only one ".txt" file exists in this file, you can double-click "main.exe" to start batch downloading. If you need to specify which ".txt" file to download, you need to enter the command "./main.exe ./{filename}"(for example "./main.exe ./SCP23423.txt") in this path. And then the download starts.(Note: The path to the file must not contain spaces or special characters.)
Linux:
1.Get Data Download Tool
First, use "wget http://singpro.idrblab.net/sites/files/DownloadTool/data_download_tool_Linux.zip" to download the Data Download Tool.
After downloading, decompress the compressed file using "unzip data_download_tool_Linux.zip". The main file is stored in this folder.
When Data Download Tool download data in batches, it will use the breakpoint reconnection function of wget to avoid the inconvenience caused by the interruption of file download due to network or other problems, and the version of wget is not less than 1.16. You can use "wget --version" to view the wget version.
2.Get Download File ID List
Users can download the ID list of files for any SingPro project and place it in the "data_download_tool_Linux" folder
3.Start Batch Download
You need to enter the command "./main ./{filename}"(for example "./main ./SCP23423.txt") in this path. And then the download starts.
